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J Thorac Cardiovasc Surg 2005;130:330-339
© 2005 The American Association for Thoracic Surgery
Cardiopulmonary Support and Physiology |
a Department of Anesthesiology, Duke University Medical Center, Durham, NC
b Department of Surgery, Duke University Medical Center, Durham, NC
c Department of Pharmacology/Cancer Biology, Duke University Medical Center, Durham, NC
d Duke Comprehensive Cancer Center (BioInformatics Shared Resource), Duke University Medical Center, Durham, NC
Read in part at Fourth Scientific Forum on Quality of Care and Outcomes Research in Cardiovascular Disease and Stroke, Washington, DC, October 1214, 2002.
Received for publication June 11, 2004; revisions received November 2, 2004; accepted for publication November 5, 2004. * Address for reprints: Mihai Podgoreanu, MD, Department of Anesthesiology, Duke University Medical Center, Genome Science Research Bldg 1, 595 LaSalle St, Ste 1027, Durham, NC 27710 (Email: podgo001{at}mc.duke.edu).
| Abstract |
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METHODS: We used a unique rat model of cardiopulmonary bypass in which sternotomy, direct operations on the heart, aortic crossclamping, and cardioplegic arrest were not performed. Hearts from 6 animals randomized to either 90 minutes of cardiopulmonary bypass or sham control animals were used to perform cDNA microarray analyses of 2343 genes. Real-time quantitative polymerase chain reaction was used to confirm the microarray results for a subset of genes.
RESULTS: Compared with sham-operated control animals, myocardium from animals undergoing cardiopulmonary bypass revealed 42 differentially expressed genes. Upregulated genes include the transcription activator nuclear factor
B, adhesion molecules (vascular cell adhesion molecule 1 and P-selectin), and interleukin 6 receptor subunits; downregulated genes include transforming growth factor ß receptor 2, tissue inhibitor of metalloproteinase 3, and mitogen-activated protein kinase 1. Distinct proinflammatory gene cascades were confirmed by means of category overrepresentation analysis.
CONCLUSIONS: This study represents an initial report on the use of microarray technology to elucidate cardiac transcriptional programs in response to cardiopulmonary bypass-specific injury in vivo. These preliminary findings, combined with future functional genomic studies superimposing ischemia and reperfusion and other inflammatory stimuli, should improve our understanding of the molecular regulatory networks involved in myocardial responses to injury and aid in the development of novel cardioprotective and perfusion strategies.
| Introduction |
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Almost 50 years after the first clinical application of cardiopulmonary bypass (CPB), the pathophysiology of injury-induced myocardial dysfunction after cardiac operations with CPB remains poorly characterized. Numerous experimental and clinical studies have demonstrated that CPB leads to a systemic inflammatory response triggered by bioincompatibility of blood-contacting surfaces, surgical trauma, ischemia and reperfusion, and endotoxemia.
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It is increasingly recognized that this generalized inflammation is implicated in the pathogenesis of post-CPB cardiovascular dysfunction, including myocardial stunning, ischemia, and ß-adrenergic desensitization.
2,3
In addition to the well-described changes in circulating levels of proinflammatory mediators associated with CPB, it has been established that the heart itself participates in the host inflammatory response to cardiac surgery,
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but underlying molecular regulatory mechanisms remain poorly characterized.
Transcriptional profiling has emerged as a powerful tool for delineating complex patterns of tissue-specific gene expression in response to severe systemic stimuli and injury,
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and several recent studies have used microarray technology to examine the global myocardial stress response during cardiac surgery.
6,7
However, interpretation of such gene expression analyses is complicated by the activation of biologic cascades stemming from the combined insults of cardioplegic arrest, ischemia and reperfusion, and direct tissue injury in addition to the effects of CPB. Therefore, to begin dissecting the molecular mechanisms underlying myocardial responses to specific CPB-initiated injury, we used a unique model of rat CPB in which median sternotomy, direct operations on the heart, aortic crossclamping, and cardioplegic arrest were not performed. Specifically, we tested the hypothesis that nonpulsatile normothermic CPB alone (in the absence of cardioplegic arrest and ischemia-reperfusion) activates both systemic proinflammatory responses and myocardial inflammatory gene cascades. Such differential gene expression profiling in response to different myocardial stressors or insults might provide mechanistic insights that aid in the development and evaluation of novel cardioprotective and perfusion strategies.
| Methods |
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RNA Isolation, Labeling, and cDNA Array Hybridization
Total RNA was extracted from tissue samples (whole hearts) by using the Trizol method (Gibco BRL Life Technologies, Rockville, Md). Genomic DNA contamination was removed by means of digestion of RNA samples with DNase I (Ambion, Inc, Austin, Tex) and confirmed by means of polymerase chain reaction (PCR) using glyceraldehyde-phosphate dehydrogenase (GAPDH)specific primers. Radiolabeled cDNA probes were synthesized by means of reverse transcription of total RNA (5 µg) in the presence of
-[32P]dCTP and hybridized to Atlas Rat cDNA expression nylon arrays (Rat 1.2 and 1.2II; Clontech, BD Biosciences, Palo Alto, Calif) for 12 hours at 68°C, according to the manufacturers protocol. The arrays were washed in 2x saline sodium citrate/1% sodium dodecylsulfate at 68°C for 2 hours and in 0.1x saline sodium citrate/0.5% sodium dodecylsulfate at 68°C for 30 minutes and exposed to low-energy storage phosphor screens (Molecular Dynamics, Sunnyvale, Calif) for 24 hours.
Microarray Data Analysis
Phosphor images were acquired with a PhosphorImager Storm system (Molecular Dynamics) at 100 µm resolution. Hybridized spots intensities on the microarray were quantified with ImageQuant (Molecular Dynamics) and AtlasImage version 2.02 (Clontech, BD Biosciences) software. Background intensities were subtracted from the hybridization signal, and genes with background-adjusted intensities of less than twice the background value were filtered out. The annotation of genes spotted on the Clontech Atlas Rat v1.2 (I and II) microarray was updated by querying the National Center for Biotechnology Information (NCBI) Unigene database and using the 2370 GenBank identifiers provided by the manufacturer. To remove systematic intensity differences among arrays caused by differences in film exposure, labeling efficiency, and hybridization-washing conditions, a variance stabilizing transformation and normalization (VSN) method
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was applied to each hybridization image as follows:
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Category overrepresentation analysis was performed with the Expression Analysis Systematic Explorer software, as previously described, to identify and prioritize biologic themes within the lists of differentially expressed genes.
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By using the 3 systems of Gene Ontology (http://www.geneontology.org/) as categorization systems, the Expression Analysis Systematic Explorer software calculates the statistical measure of overrepresentation of differentially expressed genes with respect to the total number of genes assayed and annotated within each system. This is reported as the 1-tailed Fisher exact probability corrected for multiple comparisons by using a bootstrap function with 10,000 random trials.
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Real-Time Reverse Transcriptase-Polymerase Chain Reaction
Reverse transcriptase-polymerase chain reaction (RT-PCR) was used to validate microarray data for 7 genes selected on the basis of involvement in recognized proinflammatory and immunologic pathways: IL-6 signal transducer (gp130), mitogen-activated protein kinase 1 (MAPK1), nuclear factor
B p105 subunit (NFKB1), platelet selectin (SELP), tissue inhibitor of metalloproteinase 3 (TIMP3), transforming growth factor ß receptor 2 (TGFBR2), and vascular cell adhesion molecule 1 (VCAM1). Total heart RNA (3 µg) from each animal was reverse transcribed with commercially available reagents (Perkin Elmer Life Sciences, Boston, Mass). RT-PCR was performed in duplicate by using the LightCycler Instrument (Roche Diagnostics, Indianapolis, Ind) and SYBR Green I fluorescence for detection. Primer sequences for the validation genes were as follows: gp130 (5'-gtggcccagcatcaatgtgtcatcc; 3'-agaacttccgtactgatcctcgtgg), MAPK1 (5'-gggccgcgctacactaatctctc; 3'-ccggatgatgtcattgatgccgatg), NFKB1 (5'-tcttcgactacgcggttacgggag; 3'-gatcacggccaagtgcaaaggtgtc), SELP (5'-caataagactctcacggcggaggc; 3'-caggtgtagctcccaatggtctcg), TIMP3 (5'-gtacacagggctgtgcaactttgtg; 3'-cttctgccggatgcaggcgtagtg), TGFBR2 (5'-ggagtccttcaagcagacggatgtc; 3'-cagcactcggtcagtgtctcacac), VCAM1 (5'-ggctacatccacactgacgctgag; 3'-cccttcagtagttcaatctccagatgg), GAPDH (5'-gaccccttcattgacctcaac; 3'-cttctccatggtggtgaaga). PCR conditions were 0.2 U of Platinum Taq (Hot Start; Invitrogen Life Technologies, Carlsbad, Calif) with supplied buffer, 1 µL of SYBR Green I (Molecular Probes, Inc, Eugene, Ore) diluted 1:1500, 0.25 µmol/L of each PCR primer, 200 µmol/L of each deoxyribonucleoside triphosphate, and 120 ng of cDNA in a final volume of 20 µL. The amplification profile was as follows: initial denaturation at 95°C for 2 minutes and then 40 cycles of 95°C for 5 seconds, 58°C for 10 seconds, and 72°C for 5 seconds. Tests of optimal annealing conditions and melting-curve analysis were conducted for each set of gene-specific primers; typically, fluorescence was acquired on channel F1 at 85°C for 2 seconds. Fluorescence curves were analyzed by means of a second derivative method with the LightCycler Quantification Software v1.0 (Roche Diagnostics). Relative transcript abundance (normalized to GAPDH) was determined by means of comparison with 3 control samples serially diluted 10-fold. Amplicons were recovered after separation by means of electrophoresis on a 2% Tris-borate agarose gel, cloned into a plasmid, and sequenced to verify amplification of the correct PCR product.
| Results |
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B (NFKB1), and IL-6 signal transducer (gp130). The second cluster corresponds to genes identified as downregulated in the CPB group and includes MAPK1, TGFBR2, and TIMP3. Although most of these transcripts are known to be involved in immune and inflammatory responses, they have not previously been reported as being differentially expressed at the level of the myocardium in response to CPB.
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| Discussion |
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Category overrepresentation analysis identified 4 biologic themes among the upregulated transcripts annotated to main Gene Ontology biologic processes, such as inflammatory response, response to external stimulus, response to abiotic stimulus, and response to biotic stimulus. Such upregulated genes include neutrophil and endothelial adhesion molecules (VCAM1 and SELP), cytokine receptors (IL6RA and gp130), proinflammatory chemokines (IP10), and inflammatory enzymes (phospholipase A2). Coregulation of these genes conceivably could be explained by activation of the common transcriptional inducer NF-
B because they all share NF-
B-binding motifs in their promoter regions.
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NF-
B is a transcriptional regulator consisting of homodimers and heterodimers of 5 proteins of the Rel family, including p65/RelA, p105/p50/NFKB1, p100/p52/NFKB2, c-Rel, and RelB. Regulation of NF-
B activation is exceedingly complex, involving integration of transcriptional, posttranscriptional, and cytoplasmic events, culminating in nuclear translocation of NF-
B dimers and binding to specific promoter elements of target genes.
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Although the processing mechanisms that yield active p50 from the precursor p105 molecule remain to be fully elucidated, previous studies indicate that p105 gene expression directly correlates with NF-
B transcriptional activity
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and is upregulated in response to different inflammatory stimuli.
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We find a strong (8.2-fold) induction of p105 gene expression in response to CPB, which is highly consistent with other proinflammatory and immunomodulatory genes identified in our model system. Although previous studies have demonstrated NF-
B involvement in the pathophysiology of myocardial injury associated with cardiac surgery,
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they lacked the ability to differentiate between the roles of cardioplegic arrest and ischemia and reperfusion versus CPB exposure. Our findings suggest that myocardial NF-
B transcriptional activity might also be influenced by ischemia-independent mechanisms, leading to local activation of proinflammatory cascades. However, these data do not allow differentiation between the roles of nonpulsatile flow and exposure to CPB itself in explaining the observed changes in myocardial gene expression, and further studies comparing pulsatile and nonpulsatile CPB are required.
We demonstrated a significant increase in plasma IL-6 levels after CPB previously associated with circulatory dysregulation and myocardial dysfunction.
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IL-6 is a pleiotropic cytokine that exerts its many actions through a heterodimeric receptor consisting of 2 membrane-bound glycoproteins (IL-6 binding subunit [IL6RA] and IL-6 signal transducer [gp130]), which are responsible for signal transduction and orchestration through the JAK/STAT pathway, and shared by other cytokines of the IL-6 family.
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Myocardial mRNA expression of both IL-6 receptor subunits increased in the CPB group, making them attractive targets for attenuation of IL-6mediated injury during cardiac surgery.
In addition to the observed activation of proinflammatory genes, suppression of local anti-inflammatory activity is suggested by the significant downregulation of myocardial transforming growth factor receptor 2 (TGFBR2) mRNA, a key molecule modulating various TGF-ßmediated immunosuppressive and immunomodulatory effects.
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Interestingly, 2 novel biologic themes, namely calcium ion binding and nucleocytoplasmic transport, have been identified among the genes downregulated in response to CPB and prioritized for further analysis and functional characterization.
This work has several limitations apart from those discussed above. First, our findings provide only preliminary insight into potential pathways that are activated in a defined temporal window and suggest orchestration of a programmed response to upregulate proinflammatory genes, likely in an NF-
B-dependent mechanism. Confirming the physiologic significance of the observed transcriptional changes requires the analysis of temporal gene expression profiles and the association with changes in protein expression. Second, the presence of heterogeneous myocardial cell populations in a whole-heart preparation is partially counterbalanced by the fact that the biologic relevance of our findings (the proposed physiome) might be lost in the absence of cell-cell interactions. A third limitation of this study involves the relevance of the small-animal model to the human clinical condition. Although hemodynamic, gas exchange, and acid-base parameters are similar to clinical CPB in human subjects, the higher proportion of blood-foreign surface interaction relative to body weight in the rat model and the use of donor rat blood to prime the CPB circuit are current technologic limitations of rat CPB, which could conceivably alter patterns of gene expression. Despite this, a number of factors suspected to induce myocardial injury during cardiac surgery, including the inflammatory response, are replicated by this model.
| Conclusion |
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B might be a nexus of control in the myocardial inflammatory activation because most genes identified appear to be regulated in an NF-
B-dependent manner. These preliminary findings, combined with future studies superimposing ischemia-reperfusion injury with or without CPB, should help elucidate the role played by (dys)regulation of inflammatory pathways in the response to myocardial injury. Studies such as these should ultimately aid in the development of novel pharmacologic and genetic cardioprotective strategies for cardiac surgical patients.
| Footnotes |
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* M.V.P. and G.A.M. contributed equally to this article. ![]()
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